For the life of me, I just don't understand this selective and confusing approach to braking. As long as I can remember, from the MSF safety course, to books I've read from David Hough and Lee Parks, I believe I've always seen that you use BOTH BRAKES smoothly on a motorcycle. Why upset the dynamics or otherwise lose braking power, especially on a bike with linked brakes where it's supposed to compensate?
I've always ridden this way, with my old bike w/o linked, and now with the Connie. Only issue I ever had was on the old bike, going downhill in a curve, in the rain, and stopping at a light one time. Back wheel tried to lock and come around a couple times, where each time I eased up on the back brake to settle it.
Even when practicing full-on panic stops, with BOTH brakes, I've not locked the rear wheel on this bike. So my advice to anyone is simple, use BOTH brakes smoothly, only modifying this habit if conditions really warrant it. Your "muscle memory" should be to use both brakes.